Single Cell Explorer-Single Cell Analysis Tool

Example

Assisting in interpreting scRNA-seq data, guiding through dimensionality reduction techniques like t-SNE or UMAP.

Scenario

A researcher working on a dataset from a heterogeneous tissue sample could use this function to identify distinct cell populations and their gene expression profiles.

Example

Providing insights into the selection of appropriate single-cell technologies based on the sample type and research question.

Scenario

A team planning to study tumor microenvironments might need advice on choosing between single-cell ATAC-seq and single-cell RNA-seq, considering their specific objectives.

Example

Suggesting effective ways to visualize complex datasets, like using heatmaps or violin plots for gene expression data.

Scenario

For a researcher attempting to present findings on cellular heterogeneity in a clear, comprehensible manner, I can recommend and explain the most suitable visualization techniques.