Microscope Image Analysis GPT-microscopy image analysis guide

Example

Segmenting cell nuclei in fluorescence microscopy images using Cellpose.

Scenario

A researcher can use guidance on optimizing Cellpose parameters to improve segmentation accuracy, leading to better identification of cellular structures in a high-throughput screening.

Example

Enhancing contrast in a brightfield microscopy image using scikit-image.

Scenario

Helping a biologist to apply adaptive histogram equalization to improve the visibility of features in a tissue sample, which aids in more accurate analysis and quantification.

Example

Visualizing spatial gene expression data in tissue sections using Napari.

Scenario

Assisting a genomics researcher to integrate and visualize multiplexed imaging data, facilitating the exploration of spatial relationships between gene expression patterns and cellular morphology.

Example

Using Dask to handle large volumetric datasets from 3D confocal microscopy.

Scenario

Guiding a neuroscientist in processing and analyzing large 3D brain imaging datasets efficiently, reducing computational time and memory usage.